[Cloned from a support ticket we received]
HTSeq can be installed within a Conda environment using the following steps:
conda create -n htseq_env
conda activate htseq_env
mamba install -c conda-forge -c bioconda -c anaconda python numpy pysam matplotlib scipy anndata pyBigWig
which pip # should be from within the environment
pip install HTSeq
When using HTSeq in the future make sure to run conda activate htseq_env to set the environment up correctly.
Additionally the name “htseq_env” can also be changed to whatever you like.